Specialised Chemistry-COE

COEs at Chemistry Innovation Research Centre for Bringing Speed and Quality to drug discovery.

Our Centre of Excellence is designed to support expanded discovery chemistry services where we cultivate expertise in emerging methodologies.

Discover how our Centre of Excellence unites various processes and expert insights in proven and emerging approaches.

Our Experts Leverage their Expertise in Proven and Emerging Methodologies

Degraders Chemistry

Proteolysis targeting chimaeras (PROTACs), PHOTACS (photochemically targeted chimaeras) and LYTAC (lysozyme targeting chimaeras) are heterobifunctional molecules based on the combination of ubiquitin E3 ligase ligands with an inhibitor of the protein of interest (POI) via different types of linkers. With this design, the protein of interest can be degraded, which may have different biological effects compared to classical inhibition. This technique has some advantages, as it can be used for undruggable targets. Additionally, PROTACs act in very low concentrations, and they can provide increased selectivity for the target of interest rather than the original small molecule inhibitor.

Jubilant Biosys, keeping pace with the recent developments in the field of PROTAC, PHOTAC and LYTAC, created an efficient and highly skilled group of synthetic and analytical chemists led by project leaders trained from various national and international premier organizations to undertake the synthesis of these complex molecules. This group can synthesise these complex molecules in a very short time with very high purity. A variety of ligands (thalidomide, lenalidomide, pomalidomide, VHL, glycopeptides) with linkers of varying sizes, synthesised internally, is used regularly for the synthesis of these compounds.

The synthetic group is supported by a highly proficient analytical team, which purifies and analyses the intermediates and final compounds before shipping them to the clients. In the recent past, we have been able to synthesise, purify and characterise these molecules with molecular weights ranging from 450 to 2400. In addition to the synthesis of commercially available ligands on the multigram scale, we are also well-versed in developing novel structures.

We also have an elaborate Project management group which looks after the project from the initiation to delivery. This group also takes care of all the shipment requirements especially when required under controlled conditions (~ -20oC).

Lipid Chemistry

The demand for lipids in pharmaceutical applications is expected to rise due to their increasing use in drug development and many other pharmaceutical applications. Lipids are a highly influential component in the development of mRNA-based vaccines for COVID-19. Its massive demand in the development of COVID-19 vaccines for the global population has compelled manufacturers to ramp up their lipid production.

These are Different Types of Lipids Known in the Literature Based on their Properties

Our Capabilities:

Jubilant Biosys has over three years of rich experience in the synthesis of lipids with a dedicated team of 20-25 scientists.

  • Dedicated team of chemists handling synthesis of lipids in FTE and FFS model.
  • Expertise in the purification of sensitive lipids using special immobilized columns.
  • Analysis of Lipids through ELSD, CAD, LCMS, D Mass, HIRMS, NMR (1H, 13C, 19F, 23Na, 31P and Q-NMR), and IC.
  • Multistep synthesis of complex lipids ranging from mg to scale-ups to kilo level in GMP/GLP.
  • Expertise in different phases, both in R&D and tech.
  • GMP-certified torrent purification system and ELSD prep purification system.

Carbohydrate Chemistry

Jubilant Biosys has dedicated, highly qualified, and experienced synthesis and purification teams led by experienced project leaders to carry out SPPS and carbohydrate chemistry projects. The blend of experience and expertise leads to quick familiarization of project requirements, innovative strategies for synthetic route designing, and their execution.

The teams have considerable experience in the synthesis and purification from mg to a multi-gram scale of:

  • Modified and novel sugars (fluorinated sugar, thio and aza-sugar, 2-amino sugars, neuraminic acid and selenoglycoside, and C-glycosides).
  • Synthesis of non-natural sugars and amino acids to modify different carbohydrate analogues.
  • Modified phosphate sugars.
  • Selective anomer synthesis of modified sialic acids.
  • Synthesis of PEGylated sugars to be used in the click reaction to prepare macromolecules.

To support the synthetic teams, we have an equally experienced and dedicated analytical team equipped with advanced instruments like:

  • Calibrated HPLC/ion exchange systems and methods specifically suited for carbohydrates.
  • Zirbus VaCo 5 freeze dryer for the removal of solvents and aqueous medium of purified material at low temperature.
  • ELSD and mass-directed preparative HPLC detectors for the purification of UV-inactive sugars, PEG linkers.
  • Five 400 MHz NMR spectrometers (BBFO probe) to conduct NMR experiments.

Over the past decade, our team of highly skilled FTEs has a proven track record in successfully delivering challenging carbohydrate chemistry projects.

Parallel & Library Synthesis

Parallel synthesis and Library synthesis are two important tools in modern drug discovery. They enable the synthesis of a large number of closely related analogues in a short time following general synthetic transformations. Thus, parallel library synthesis has the potential to reduce the cycle time of medicinal chemistry efforts significantly. Therefore, in the past few decades, we found that the synthesis of focused small molecule libraries are very useful for the optimization of drug leads.

Jubilant Biosys has over 15 years of rich experience in the synthesis of custom libraries. We have a strong track record of delivering several focused libraries ranging from 20-300 compounds and large libraries of up to 6000 compounds. We have a dedicated team of highly skilled and experienced chemists capable of performing complex chemical synthesis and purification. We are fully equipped with state-of-the-art infrastructure and highly proficient in parallel synthesis, high throughput purification, compound analysis, and management.

Scale-up Chemistry

Jubilant Biosys partners with pharmaceutical and biotechnology companies to translate laboratory-scale processes into robust, scalable manufacturing solutions for high-value intermediates and APIs.

Our scale-up expertise ensures consistent performance, optimized yields, and controlled impurity profiles across development stages. With a strong focus on process understanding, safety, and reproducibility, we enable seamless progression from early development to pilot and commercial scale.

Backed by an integrated R&D and scale-up ecosystem, we support smooth transition from discovery to gram-to-kilogram scale production, enabling faster and more reliable process scale-up.

Capabilities

  • Process development, optimization, and control strategy
  • Lab-to-pilot and pilot-to-commercial scale-up
  • Technology transfer and manufacturing readiness
  • Scale-up from grams to ~25 kg using reactors ranging from 20L to 250L
  • Robust infrastructure supporting multi-step small-molecule synthesis and early-phase scale-up

Key Strengths

  • Integrated discovery-to-scale-up platform enabling seamless progression across stages
  • Strong expertise in route scouting, process optimization, and scalable chemistry development
  • Risk-assessed scale-up supported by structured safety evaluation frameworks
  • Operations aligned with global quality and safety standards with SOP-driven execution
  • Flexible collaboration models supporting both FFS and FTE engagements

Electrochemistry / Organic Synthesis / PhotoRedox Chemistry

Electrochemistry in Organic Synthesis

In recent years electro organic synthesis has emerged as a promising green methodology in organic chemistry and a quick alternative to conventional organic synthesis in academic labs.

Several breakthrough research papers using electrochemical reactions which are alternatives to Birch reduction by avoiding the use of Na/Li-metal, reduction of amide to an amine by avoiding the use of pyrophoric LAH or borane in a scalable manner, reduction of the double bond to single bond by avoiding Pd/C, epoxidation without the use of peroxide reagent, and chemoselective reduction of hetero arenes, have attracted chemical industries to adopt this new technology.

Other high potential reactions such as decarboxylative sp3-sp2 and sp3-sp3 cross-coupling, O-arylation of alcohols, sulfonylation of aryl halides, and dimerization of amine are successfully carried out using electrochemical reactions. All these reported new methods have drastically reduced the number of steps compared to conventional synthesis, reducing time and waste by improving yield.

Jubilant Biosys is committed to this cause and has a dedicated team of scientists exploring novel methods to cater to the needs of our clients, and the recent launch of ElectraSyn 2.0 by IKA has helped us in this endeavour.

Our Capabilities

PhotoRedox Chemistry

After the first report of the PhotoRedox reaction by Prof. David MacMillan in Science 2008, there has been exponential growth in this field. A search in Reaxys with the code word “PhotoRedox Reaction” showed nearly 900 publications in 2021. In the last ten years, PhotoRedox catalysis has moved from academic research labs to industrial curiosity. According to Prof. MacMillan, every pharmaceutical company he visited is now doing PhotoRedox in medicinal chemistry, and thousands of drug-like compounds are being generated this way.

Many catalytic conversions like C-C bond forming (sp3-sp2 and sp3-sp3 cross-coupling), cycloaddition, challenging functional group conversion, and unusual rearrangement, which were either not feasible through conventional methods or lengthy routes are achieved using PhotoRedox reaction.

Jubilant Biosys is actively working on this technology by using a Penn PhD Photoreactor with a dedicated team of 10 scientists who are well-trained and efficient in successfully screening reaction conditions carried out several C-C bond formation reactions as well as functional group transformations. Jubilant has been supporting many of its collaborators through this new technology to test challenging and novel reaction conversion. We are now focusing on continuous-flow photochemistry by combining our flow reactor with a photo reactor, which will have excellent potential for scalability

Our Capabilities Comprise of

With our uniquely designed, digitally enabled state-of-the-art facility at CIRC, our Centers, of Excellence Support you in the drug discovery process.

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